Wound evolution

rgl graphic

plyLoadR similar graphic

Show the code

# Load the same ply files, now via the plyLoadR library
library(plyLoadR)

plyLoadR(
  paths = paste0(Mainpath, "/", patient1_FolderViews),
  localFiles = TRUE,
  elementId = "plyLoadRGraphic1",
  isTransparent = TRUE,
  opacity = list(0.4, 0.6),
  isWireframe = FALSE
)

plyLoadR: Mesh evolution

Show the code

# Load ply files with 'aligned' geometries
plyLoadR(
  paths = paste0(Mainpath, "/", patient0_FolderViews),
  localFiles = TRUE,
  elementId = "plyLoadRGraphic2",
  isTransparent = TRUE,
  opacity = 0.5,
  camera = list(position = list(30, 0, 25)),
  toggleWidgets = TRUE,
  toggleLabels = c("2020-07-09", "2020-07-17", "2020-07-24")
)

Github repo for this example

--- title: "Wound evolution" execute: echo: false warning: false format: html: theme: yeti toc: true toc-float: true highlight-style: pygments code-tools: true code-fold: true code-summary: "Show the code" --- ```{r, setup} #| include: false library(rgl) # Include the rgl graphic into the HTML page setupKnitr(autoprint = TRUE) # Suppress each separate window for rgl graphics options(rgl.useNULL = TRUE) # Global variables patient = "EC00286" hospital = "VD" Mainpath = "./ply-files" FolderViews = dir(Mainpath) ViewsNames = stringr::str_sub(FolderViews, start = 10, end = -5L) patient0_FolderViews = FolderViews[1:5][1:3] patient0_ViewsNames = ViewsNames[1:5][1:3] patient1_FolderViews = FolderViews[-(1:5)][1:2] patient1_ViewsNames = ViewsNames[-(1:5)][1:2] ``` ## rgl graphic ```{r, load-ply-files-into-rgl} #| message: false #| include: false m3d <- list() for (i in 1:length(patient1_FolderViews)) { m3d[[i]] <- Rvcg::vcgPlyRead(paste0(Mainpath, "/", patient1_FolderViews[i])) } # Set opacity of graphics m3d[[1]]$material$alpha <- 0.4 m3d[[2]]$material$alpha <- 0.6 rgl::close3d() library(magrittr) ``` ```{r, create-rgl-graphic} #| include: false # Open and load geometries rgl::open3d() bg3d(color = "gray10") rgl.material(back = "culled", lit = FALSE, shininess = 90) vistas3D <- list() for(i in 1:length(patient1_FolderViews)) { vistas3D[[i]] <- shade3d(m3d[[i]]) } # Create rgl widget widget2 <- rglwidget(elementId = "rglGraphic") %>% toggleWidget(ids = vistas3D[[1]], label = patient1_ViewsNames[1]) for (i in 2:length(vistas3D)) { widget2 <- widget2 %>% toggleWidget(hidden = vistas3D[[i]], label = patient1_ViewsNames[i]) } widget2 <- widget2 %>% asRow(last = length(patient1_ViewsNames)) rgl::close3d() ``` ```{r, display-rgl-graphic} widget2 ``` ## plyLoadR similar graphic ```{r} #| echo: true # Load the same ply files, now via the plyLoadR library library(plyLoadR) plyLoadR( paths = paste0(Mainpath, "/", patient1_FolderViews), localFiles = TRUE, elementId = "plyLoadRGraphic1", isTransparent = TRUE, opacity = list(0.4, 0.6), isWireframe = FALSE ) ``` ## plyLoadR: Mesh evolution ```{r} #| echo: true # Load ply files with 'aligned' geometries plyLoadR( paths = paste0(Mainpath, "/", patient0_FolderViews), localFiles = TRUE, elementId = "plyLoadRGraphic2", isTransparent = TRUE, opacity = 0.5, camera = list(position = list(30, 0, 25)), toggleWidgets = TRUE, toggleLabels = c("2020-07-09", "2020-07-17", "2020-07-24") ) ``` <br> <br> [Github repo for this example](https://github.com/lucio-cornejo/rgl-plyLoadR-comparison-example)